IL_4V5K_180

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_180 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.119

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5K|1|CA|G|450
4V5K|1|CA|A|451
4V5K|1|CA|A|452
4V5K|1|CA|A|453
4V5K|1|CA|C|454
4V5K|1|CA|C|455
*
4V5K|1|CA|G|476
4V5K|1|CA|A|477
4V5K|1|CA|C|479
4V5K|1|CA|U|480
4V5K|1|CA|G|481
4V5K|1|CA|A|482
4V5K|1|CA|C|483

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16