IL_4V5K_190

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V5K|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_190 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1035

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5K|1|CA|G|662
4V5K|1|CA|A|663
4V5K|1|CA|G|664
4V5K|1|CA|A|665
4V5K|1|CA|G|666
*
4V5K|1|CA|U|740
4V5K|1|CA|G|741
4V5K|1|CA|G|742
4V5K|1|CA|U|743

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S6

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CR

30S RIBOSOMAL PROTEIN S18