IL_4V5K_195

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4V5K|1|CA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_195 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2917

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V5K|1|CA|U|921
4V5K|1|CA|G|922
4V5K|1|CA|A|923
*
4V5K|1|CA|U|1393
4V5K|1|CA|A|1394
4V5K|1|CA|C|1395
4V5K|1|CA|A|1396

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S RIBOSOMAL PROTEIN S5