IL_01334.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_9PN5_212	9PN5	0.4178	1		B5	SSU rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385	cWW	ncWw	cWW
2	IL_9H3G_225	9H3G	0.4489	1		h1	SSU rRNA	C	1340	G	1342	C	1343	*	G	1386	A	1387	G	1388	cWW	cWW	cWW
3	IL_1XJR_003	1XJR	0.3934	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18	cWW	cWW	cWW
4	IL_9TEL_001	9TEL	0.2256	0		X+Y	RNA (10-mer)	U	4\|\|A	U	5\|\|A	C	6	*	G	5\|\|A	U	6	A	7	cWW		cWW
5	IL_9PN5_015	9PN5	0.1353	0		A1	LSU rRNA	U	429	U	430	U	431	*	A	628	U	629	A	630	cWW		cWW
6	IL_4Y1M_005	4Y1M	0.1488	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	A	103	U	104	A	105	*	U	4	U	5	U	6	cWW	ncWw	cWW
7	IL_9NLN_002	9NLN	0.1773	0		C	RNA (CVB3 IRES Domain V)	U	102	U	103	G	104	*	C	9	U	10	G	11	cWW	ncWw	cWW
8	IL_7A0S_011	7A0S	0.1856	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575	cWW	cWW	cWW
9	IL_8B0X_077	8B0X	0.2486	0	Isolated non-canonical cWW pair (H)	a	LSU rRNA	A	577	U	578	G	579	*	C	566	C	567	U	568	cWW	cWW	cWW
10	IL_4WF9_017	4WF9	0.2485	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	618	U	619	G	620	*	C	607	C	608	U	609	cWW	cWW	cWW
11	IL_9DFE_013	9DFE	0.2205	0	Isolated non-canonical cWW pair	1A	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566	cWW	cWW	cWW
12	IL_7QQP_007	7QQP	0.1872	0	Isolated non-canonical cWW pair	C+A	AAVS1 off-target3 target strand	DA	12	DC	13	DT	14	*	A	7	C	8	U	9	ncWW	ncwW	cWW
13	IL_8QYX_170	8QYX	0.1879	0	Isolated non-canonical cWW pair (H)	B2	5S rRNA	U	79	U	80	G	81	*	C	95	U	96	G	97	cWW	cWw	cWW
14	IL_9H3G_152	9H3G	0.2306	0	Isolated non-canonical cWW pair (H)	C3	5S rRNA	U	79	A	80	G	81	*	C	95	C	96	G	97	cWW	cWW	cWW
15	IL_8GLP_272	8GLP	0.1312	0		S2	SSU rRNA	U	1560	A	1561	C	1562	*	G	1573	C	1574	G	1575	cWW	cWW	cWW
16	IL_8GLP_281	8GLP	0.0000	0	Isolated non-canonical cWW pair (H)	S2	SSU rRNA	U	1729	U	1730	A	1731	*	U	1803	OMU	1804	G	1805	cWW		cWW
17	IL_8CRE_473	8CRE	0.0767	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1652	U	1653	A	1654	*	U	1721	U	1722	G	1723	ncWW		cWW
18	IL_7A0S_107	7A0S	0.1372	0	Isolated non-canonical cWW pair	Y	5S rRNA	U	82	C	83	G	84	*	C	97	C	98	G	99	cWW	ncBW	cWW
19	IL_8CRE_464	8CRE	0.1271	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1483	U	1484	G	1485	*	C	1496	U	1497	G	1498	cWW		cWW
20	IL_4KYY_002	4KYY	0.1541	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10	cWW		cWW
21	IL_4WF9_018	4WF9	0.1878	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	705	U	706	G	707	*	U	638	U	639	G	640	cWW		cWW
22	IL_9H3G_231	9H3G	0.2491	0		h1	SSU rRNA	U	1499	U	1500	G	1501	*	C	1512	C	1513	G	1514	cWW	cWW	cWW
23	IL_4V83_235	4V83	0.3015	0	Isolated non-canonical cWW pair	CV	domain 3 of PSIC IGR IRES RNA	G	6173	U	6174	G	6175	*	C	6153	U	6154	C	6155	cWW	ncwW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUG*CCU	4
UUG*CUG	3
UUG*UUG	2
CUAC*GAG	1
CUGC*GAG	1
GAGG*CAC	1
UUC*GUA	1
UUU*AUA	1
AUA*UUU	1
ACT*ACU	1
UAG*CCG	1
UAC*GCG	1
UUA*UG	1
UUA*UUG	1
UCG*CCG	1
UUG*CCG	1
GUG*CUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	10
U*C	5
C*C	2
A*C	2
UA*A	1
UG*A	1
AG*A	1
U*(OMU)	1

Release history

Release	4.10
Date	2026-05-20
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_01334.1 Version IL_01334.1 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_01334.1 Version IL_01334.1 of this group appears in releases 4.10 to 4.10

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Csv

Json