IL_4V5K_277

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V5K|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_277 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0714

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V5K|1|DA|A|1669
4V5K|1|DA|C|1670
4V5K|1|DA|U|1671
4V5K|1|DA|C|1672
4V5K|1|DA|U|1673
4V5K|1|DA|G|1674
*
4V5K|1|DA|C|1990
4V5K|1|DA|U|1991
4V5K|1|DA|G|1992
4V5K|1|DA|U|1993

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DO

50S RIBOSOMAL PROTEIN L14