IL_4V5K_295
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAG*CGGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5K_295 not in the Motif Atlas
- Homologous match to IL_7RQB_088
- Geometric discrepancy: 0.4149
- The information below is about IL_7RQB_088
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V5K|1|DA|C|2297
4V5K|1|DA|A|2298
4V5K|1|DA|G|2299
*
4V5K|1|DA|C|2317
4V5K|1|DA|G|2318
4V5K|1|DA|G|2319
4V5K|1|DA|A|2320
4V5K|1|DA|G|2321
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DS
- 50S RIBOSOMAL PROTEIN L18
Coloring options: