IL_4V5K_340

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4V5K|1|CA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_340 not in the Motif Atlas

Geometric match to IL_8C3A_393

Geometric discrepancy: 0.1688

The information below is about IL_8C3A_393

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4V5K|1|CA|G|925
4V5K|1|CA|G|926
4V5K|1|CA|G|927
4V5K|1|CA|G|928
*
4V5K|1|CA|C|1389
4V5K|1|CA|U|1390
4V5K|1|CA|U|1391

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CX

MRNA