IL_4V5K_342

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4V5K|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_342 not in the Motif Atlas

Geometric match to IL_5J7L_362

Geometric discrepancy: 0.2362

The information below is about IL_5J7L_362

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49612.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V5K|1|CA|C|1051
4V5K|1|CA|U|1052
4V5K|1|CA|G|1053
4V5K|1|CA|C|1054
4V5K|1|CA|A|1055
4V5K|1|CA|U|1056
*
4V5K|1|CA|A|1204
4V5K|1|CA|U|1205
4V5K|1|CA|G|1206
4V5K|1|CA|G|1207

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z