IL_4V5K_349

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V5K|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_349 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1461

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5K|1|DA|C|844
4V5K|1|DA|G|845
4V5K|1|DA|C|846
4V5K|1|DA|U|847
4V5K|1|DA|G|848
4V5K|1|DA|A|849
4V5K|1|DA|C|850
*
4V5K|1|DA|G|927
4V5K|1|DA|G|928
4V5K|1|DA|U|930
4V5K|1|DA|G|931
4V5K|1|DA|G|932
4V5K|1|DA|A|933
4V5K|1|DA|G|934

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S RIBOSOMAL PROTEIN L30