IL_4V5K_353
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 4V5K|1|AA|C|934, 4V5K|1|AA|U|1381, 4V5K|1|AA|C|1382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5K_353 not in the Motif Atlas
- Geometric match to IL_4LFB_037
- Geometric discrepancy: 0.2487
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4V5K|1|AA|G|933
4V5K|1|AA|C|934
4V5K|1|AA|A|935
*
4V5K|1|AA|U|1380
4V5K|1|AA|U|1381
4V5K|1|AA|C|1382
4V5K|1|AA|C|1383
4V5K|1|AA|C|1384
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AV
- Transfer RNA; tRNA
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- MRNA
Coloring options: