IL_4V5L_046

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4V5L|1|AA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_046 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.2131

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V5L|1|AA|G|1124
4V5L|1|AA|U|1125
4V5L|1|AA|U|1126
4V5L|1|AA|G|1127
4V5L|1|AA|C|1128
*
4V5L|1|AA|G|1143
4V5L|1|AA|G|1144
4V5L|1|AA|C|1145
4V5L|1|AA|A|1146
4V5L|1|AA|C|1147
4V5L|1|AA|U|1148
4V5L|1|AA|C|1149

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10