IL_4V5L_144

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCC*GGCC

Length

9 nucleotides

Bulged bases

4V5L|1|BA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_144 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3808

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V5L|1|BA|G|2399
4V5L|1|BA|G|2400
4V5L|1|BA|U|2401
4V5L|1|BA|C|2402
4V5L|1|BA|C|2403
*
4V5L|1|BA|G|2414
4V5L|1|BA|G|2415
4V5L|1|BA|C|2416
4V5L|1|BA|C|2417

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15