IL_4V5M_018

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1436

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5M|1|AA|G|446
4V5M|1|AA|G|447
4V5M|1|AA|A|448
4V5M|1|AA|C|449
4V5M|1|AA|G|450
*
4V5M|1|AA|C|483
4V5M|1|AA|G|484
4V5M|1|AA|G|485
4V5M|1|AA|U|486
4V5M|1|AA|A|487
4V5M|1|AA|C|488

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AP

30S RIBOSOMAL PROTEIN S16