3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
UGG*CACA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_038 not in the Motif Atlas
Geometric match to IL_4WF9_003
Geometric discrepancy: 0.2601
The information below is about IL_4WF9_003
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_90351.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

4V5M|1|AA|U|952
4V5M|1|AA|G|953
4V5M|1|AA|G|954
*
4V5M|1|AA|C|1226
4V5M|1|AA|A|1227
4V5M|1|AA|C|1228
4V5M|1|AA|A|1229

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AM
30S RIBOSOMAL PROTEIN S13
Chain AS
30S RIBOSOMAL PROTEIN S19
Chain AV
Transfer RNA; tRNA

Coloring options:


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