IL_4V5M_039

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_039 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1514

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5M|1|AA|G|993
4V5M|1|AA|A|994
4V5M|1|AA|C|995
4V5M|1|AA|A|996
4V5M|1|AA|U|997
*
4V5M|1|AA|A|1044
4V5M|1|AA|C|1045

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z