3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_052 not in the Motif Atlas
Geometric match to IL_5MWI_007
Geometric discrepancy: 0.1687
The information below is about IL_5MWI_007
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
259

Unit IDs

4V5M|1|AA|G|1405
4V5M|1|AA|U|1406
4V5M|1|AA|C|1407
*
4V5M|1|AA|G|1494
4V5M|1|AA|U|1495
4V5M|1|AA|C|1496

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AX
MRNA
Chain AY
ELONGATION FACTOR G
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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