IL_4V5M_088

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_088 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.258

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5M|1|BA|G|875
4V5M|1|BA|C|876
4V5M|1|BA|U|877
4V5M|1|BA|A|878
4V5M|1|BA|G|879
*
4V5M|1|BA|C|898
4V5M|1|BA|A|899
4V5M|1|BA|A|900
4V5M|1|BA|A|901
4V5M|1|BA|C|902

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25