IL_4V5M_105

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_105 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1004

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V5M|1|BA|A|1262
4V5M|1|BA|U|1263
4V5M|1|BA|G|1264
4V5M|1|BA|A|1265
4V5M|1|BA|G|1266
4V5M|1|BA|U|1267
4V5M|1|BA|A|1268
4V5M|1|BA|A|1269
*
4V5M|1|BA|U|2011
4V5M|1|BA|G|2012
4V5M|1|BA|A|2013
4V5M|1|BA|A|2014
4V5M|1|BA|A|2015
4V5M|1|BA|U|2016
4V5M|1|BA|U|2017

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BW

50S RIBOSOMAL PROTEIN L22