IL_4V5M_111

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4V5M|1|BA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_111 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1445

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V5M|1|BA|C|1417
4V5M|1|BA|G|1418
4V5M|1|BA|A|1419
4V5M|1|BA|U|1420
4V5M|1|BA|G|1421
*
4V5M|1|BA|C|1577
4V5M|1|BA|U|1578
4V5M|1|BA|A|1579
4V5M|1|BA|A|1580
4V5M|1|BA|G|1581

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains