IL_4V5M_171

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UGCUAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUAGCA

Length

39 nucleotides

Bulged bases

4V5M|1|AA|A|1001, 4V5M|1|AA|G|1001|||A, 4V5M|1|AA|A|1005, 4V5M|1|AA|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5M|1|AA|U|997
4V5M|1|AA|G|998
4V5M|1|AA|C|999
4V5M|1|AA|U|1000
4V5M|1|AA|A|1001
4V5M|1|AA|G|1001|||A
4V5M|1|AA|G|1002
4V5M|1|AA|G|1003
4V5M|1|AA|A|1004
4V5M|1|AA|A|1005
4V5M|1|AA|C|1006
4V5M|1|AA|C|1007
*
4V5M|1|AA|G|1022
4V5M|1|AA|G|1023
4V5M|1|AA|G|1024
4V5M|1|AA|U|1025
4V5M|1|AA|G|1026
4V5M|1|AA|C|1027
4V5M|1|AA|C|1028
4V5M|1|AA|C|1029
4V5M|1|AA|C|1030
4V5M|1|AA|G|1030|||A
4V5M|1|AA|C|1030|||B
4V5M|1|AA|G|1030|||C
4V5M|1|AA|A|1030|||D
4V5M|1|AA|G|1031
4V5M|1|AA|G|1032
4V5M|1|AA|G|1033
4V5M|1|AA|G|1034
4V5M|1|AA|A|1035
4V5M|1|AA|G|1036
4V5M|1|AA|C|1037
4V5M|1|AA|C|1038
4V5M|1|AA|C|1039
4V5M|1|AA|U|1040
4V5M|1|AA|A|1041
4V5M|1|AA|G|1042
4V5M|1|AA|C|1043
4V5M|1|AA|A|1044

Current chains

Chain AA

16S RRNA

Nearby chains