IL_4V5M_177

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CAGC*GUGGG

Length

9 nucleotides

Bulged bases

4V5M|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_177 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2485

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V5M|1|BA|C|288
4V5M|1|BA|A|289
4V5M|1|BA|G|290
4V5M|1|BA|C|291
*
4V5M|1|BA|G|349
4V5M|1|BA|U|350
4V5M|1|BA|G|351
4V5M|1|BA|G|352
4V5M|1|BA|G|353

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains