IL_4V5M_187

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_187 not in the Motif Atlas

Geometric match to IL_8VTW_350

Geometric discrepancy: 0.0847

The information below is about IL_8VTW_350

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

4V5M|1|BA|G|1666
4V5M|1|BA|G|1667
4V5M|1|BA|A|1668
4V5M|1|BA|A|1669
4V5M|1|BA|C|1670
4V5M|1|BA|U|1671
4V5M|1|BA|C|1672
4V5M|1|BA|U|1673
4V5M|1|BA|G|1674
*
4V5M|1|BA|C|1990
4V5M|1|BA|U|1991
4V5M|1|BA|G|1992
4V5M|1|BA|U|1993
4V5M|1|BA|C|1994

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BO

50S RIBOSOMAL PROTEIN L14