IL_4V5M_195

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V5M|1|BA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_195 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.4365

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09044.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5M|1|BA|G|1526
4V5M|1|BA|G|1527
4V5M|1|BA|A|1528
4V5M|1|BA|A|1528|||A
4V5M|1|BA|G|1529
*
4V5M|1|BA|U|1540
4V5M|1|BA|G|1541
4V5M|1|BA|A|1542
4V5M|1|BA|C|1543
4V5M|1|BA|A|1544
4V5M|1|BA|A|1545
4V5M|1|BA|C|1546

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains