IL_4V5N_045

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5N_045 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2542

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5N|1|AA|G|1124
4V5N|1|AA|U|1125
4V5N|1|AA|U|1126
4V5N|1|AA|G|1127
*
4V5N|1|AA|C|1145
4V5N|1|AA|A|1146
4V5N|1|AA|C|1147
4V5N|1|AA|U|1148
4V5N|1|AA|C|1149

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10