IL_4V5N_142

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

4V5N|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5N_142 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.367

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5N|1|BA|C|2129
4V5N|1|BA|U|2130
4V5N|1|BA|G|2131
4V5N|1|BA|U|2132
4V5N|1|BA|G|2133
4V5N|1|BA|A|2134
4V5N|1|BA|A|2135
4V5N|1|BA|C|2136
4V5N|1|BA|C|2137
*
4V5N|1|BA|G|2154
4V5N|1|BA|G|2155
4V5N|1|BA|G|2156
4V5N|1|BA|G|2157
4V5N|1|BA|A|2158
4V5N|1|BA|G|2159

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S RIBOSOMAL PROTEIN L1