IL_4V5N_186

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGG*UCCC

Length

7 nucleotides

Bulged bases

4V5N|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5N_186 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3719

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

4V5N|1|BA|G|2837
4V5N|1|BA|G|2838
4V5N|1|BA|G|2839
*
4V5N|1|BA|U|2878
4V5N|1|BA|C|2879
4V5N|1|BA|C|2880
4V5N|1|BA|C|2881

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19