3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
UAAA*UGACA
Length
9 nucleotides
Bulged bases
4V5O|1|AA|A|460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5O_003 not in the Motif Atlas
Geometric match to IL_4WF9_016
Geometric discrepancy: 0.3215
The information below is about IL_4WF9_016
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4V5O|1|AA|U|37
4V5O|1|AA|A|38
4V5O|1|AA|A|39
4V5O|1|AA|A|40
*
4V5O|1|AA|U|458
4V5O|1|AA|G|459
4V5O|1|AA|A|460
4V5O|1|AA|C|461
4V5O|1|AA|A|462

Current chains

Chain AA
18S RRNA

Nearby chains

Chain AD
RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
Chain AW
40S RIBOSOMAL PROTEIN S4

Coloring options:


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