IL_4V5O_003
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UAAA*UGACA
- Length
- 9 nucleotides
- Bulged bases
- 4V5O|1|AA|A|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5O_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3215
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
4V5O|1|AA|U|37
4V5O|1|AA|A|38
4V5O|1|AA|A|39
4V5O|1|AA|A|40
*
4V5O|1|AA|U|458
4V5O|1|AA|G|459
4V5O|1|AA|A|460
4V5O|1|AA|C|461
4V5O|1|AA|A|462
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain AD
- RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
- Chain AW
- 40S RIBOSOMAL PROTEIN S4
Coloring options: