IL_4V5O_009

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UUAUUU*AUCUA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_009 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2669

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V5O|1|AA|U|113
4V5O|1|AA|U|114
4V5O|1|AA|A|115
4V5O|1|AA|U|116
4V5O|1|AA|U|117
4V5O|1|AA|U|118
*
4V5O|1|AA|A|286
4V5O|1|AA|U|287
4V5O|1|AA|C|288
4V5O|1|AA|U|289
4V5O|1|AA|A|290

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AW

40S RIBOSOMAL PROTEIN S4