IL_4V5O_013

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUA*UGAUC

Length

8 nucleotides

Bulged bases

4V5O|1|AA|A|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_013 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.2181

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V5O|1|AA|G|199
4V5O|1|AA|U|200
4V5O|1|AA|A|201
*
4V5O|1|AA|U|256
4V5O|1|AA|G|257
4V5O|1|AA|A|258
4V5O|1|AA|U|259
4V5O|1|AA|C|260

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AW

40S RIBOSOMAL PROTEIN S4

Chain AY

RPS6E