IL_4V5O_027

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

4V5O|1|AA|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_027 not in the Motif Atlas

Geometric match to IL_6D3P_004

Geometric discrepancy: 0.2298

The information below is about IL_6D3P_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V5O|1|AA|C|552
4V5O|1|AA|A|553
4V5O|1|AA|U|554
*
4V5O|1|AA|A|579
4V5O|1|AA|G|580

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AC

KH DOMAIN CONTAINING PROTEIN

Chain AL

40S RIBOSOMAL PROTEIN S12

Chain AX

RPS30E