IL_4V5O_043

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_043 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1706

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V5O|1|AA|G|963
4V5O|1|AA|G|964
4V5O|1|AA|G|965
4V5O|1|AA|A|966
4V5O|1|AA|U|967
4V5O|1|AA|C|968
*
4V5O|1|AA|G|992
4V5O|1|AA|U|993
4V5O|1|AA|C|994

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AK

RPS14E