IL_4V5O_060

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4V5O|1|AA|G|1245, 4V5O|1|AA|C|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_060 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.2436

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V5O|1|AA|U|1244
4V5O|1|AA|G|1245
4V5O|1|AA|C|1246
4V5O|1|AA|A|1247
*
4V5O|1|AA|U|1408
4V5O|1|AA|G|1409

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A9

RPS31E

Chain AC

KH DOMAIN CONTAINING PROTEIN

Chain AJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN