IL_4V5O_067

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UC*GUA

Length

5 nucleotides

Bulged bases

4V5O|1|AA|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_067 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.3179

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V5O|1|AA|U|1322
4V5O|1|AA|C|1323
*
4V5O|1|AA|G|1343
4V5O|1|AA|U|1344
4V5O|1|AA|A|1345

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain AJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN