IL_4V5O_068

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_068 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.2046

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V5O|1|AA|C|1323
4V5O|1|AA|U|1324
4V5O|1|AA|G|1325
*
4V5O|1|AA|U|1341
4V5O|1|AA|U|1342
4V5O|1|AA|G|1343

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain AJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN