IL_4V5O_108

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.2

Basepair signature

cWW-L-L-L-cSH-L-cWW

Number of instances in this motif group

9

Unit IDs

4V5O|1|BA|A|543
4V5O|1|BA|G|544
4V5O|1|BA|G|545
4V5O|1|BA|G|546
4V5O|1|BA|C|547
4V5O|1|BA|A|548
4V5O|1|BA|A|549
4V5O|1|BA|G|550
*
4V5O|1|BA|C|581
4V5O|1|BA|U|582

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain BE

RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN

Chain BX

RPS30E