IL_4V5O_136

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

ACA*UCCCU

Length

8 nucleotides

Bulged bases

4V5O|1|BA|C|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_75892.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

23

Unit IDs

4V5O|1|BA|A|1130
4V5O|1|BA|C|1131
4V5O|1|BA|A|1132
*
4V5O|1|BA|U|1589
4V5O|1|BA|C|1590
4V5O|1|BA|C|1591
4V5O|1|BA|C|1592
4V5O|1|BA|U|1593

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B1

RIBOSOMAL PROTEIN S28E CONTAINING PROTEIN

Chain B5

RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN

Chain BG

RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN

Chain BI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E