IL_4V5O_153

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUAUUUC*GUAAUC

Length

13 nucleotides

Bulged bases

4V5O|1|BA|A|1488, 4V5O|1|BA|U|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30113.1

Basepair signature

cWW-tSS-L-cSS-R-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5O|1|BA|G|1459
4V5O|1|BA|U|1460
4V5O|1|BA|A|1461
4V5O|1|BA|U|1462
4V5O|1|BA|U|1463
4V5O|1|BA|U|1464
4V5O|1|BA|C|1465
*
4V5O|1|BA|G|1485
4V5O|1|BA|U|1486
4V5O|1|BA|A|1487
4V5O|1|BA|A|1488
4V5O|1|BA|U|1489
4V5O|1|BA|C|1490

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BC

KH DOMAIN CONTAINING PROTEIN

Chain BJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN

Chain BN

RPS29E

Chain BT

RPS19E