IL_4V5O_172

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AGU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_172 not in the Motif Atlas

Geometric match to IL_3IVK_002

Geometric discrepancy: 0.1788

The information below is about IL_3IVK_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5O|1|AA|A|849
4V5O|1|AA|G|850
4V5O|1|AA|U|851
*
4V5O|1|AA|G|932
4V5O|1|AA|A|933
4V5O|1|AA|U|934

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S3A

Chain A6

RPS27E

Chain AO

RPS13E