IL_4V5O_184

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CGGA*UUG

Length

7 nucleotides

Bulged bases

4V5O|1|BA|G|1123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_184 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2117

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5O|1|BA|C|1121
4V5O|1|BA|G|1122
4V5O|1|BA|G|1123
4V5O|1|BA|A|1124
*
4V5O|1|BA|U|1599
4V5O|1|BA|U|1600
4V5O|1|BA|G|1601

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B5

RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN

Chain BE

RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN