IL_4V5P_035

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_035 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0669

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V5P|1|AA|G|887
4V5P|1|AA|G|888
4V5P|1|AA|A|889
4V5P|1|AA|G|890
4V5P|1|AA|U|891
4V5P|1|AA|A|892
4V5P|1|AA|C|893
4V5P|1|AA|G|894
*
4V5P|1|AA|U|905
4V5P|1|AA|G|906
4V5P|1|AA|A|907
4V5P|1|AA|A|908
4V5P|1|AA|A|909
4V5P|1|AA|C|910

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17