IL_4V5P_048

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_048 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.1047

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V5P|1|AA|C|1158
4V5P|1|AA|U|1159
4V5P|1|AA|G|1160
4V5P|1|AA|C|1161
*
4V5P|1|AA|G|1175
4V5P|1|AA|A|1176
4V5P|1|AA|G|1177
4V5P|1|AA|G|1178
4V5P|1|AA|A|1179
4V5P|1|AA|A|1180
4V5P|1|AA|G|1181

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AI

30S RIBOSOMAL PROTEIN S9