3D structure

PDB id
4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5P_048 not in the Motif Atlas
Geometric match to IL_4LFB_050
Geometric discrepancy: 0.1047
The information below is about IL_4LFB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V5P|1|AA|C|1158
4V5P|1|AA|U|1159
4V5P|1|AA|G|1160
4V5P|1|AA|C|1161
*
4V5P|1|AA|G|1175
4V5P|1|AA|A|1176
4V5P|1|AA|G|1177
4V5P|1|AA|G|1178
4V5P|1|AA|A|1179
4V5P|1|AA|A|1180
4V5P|1|AA|G|1181

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AB
30S RIBOSOMAL PROTEIN S2
Chain AI
30S RIBOSOMAL PROTEIN S9

Coloring options:


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