IL_4V5P_062

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V5P|1|AA|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_062 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.3985

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V5P|1|AA|C|1440
4V5P|1|AA|G|1441
4V5P|1|AA|G|1442
4V5P|1|AA|G|1442|||A
4V5P|1|AA|A|1442|||B
4V5P|1|AA|G|1443
*
4V5P|1|AA|C|1459
4V5P|1|AA|A|1460
4V5P|1|AA|G|1461

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S RIBOSOMAL PROTEIN L19