IL_4V5P_210

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V5P|1|CA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_210 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5P|1|CA|G|933
4V5P|1|CA|C|934
4V5P|1|CA|A|935
*
4V5P|1|CA|U|1380
4V5P|1|CA|U|1381
4V5P|1|CA|C|1382
4V5P|1|CA|C|1383
4V5P|1|CA|C|1384

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA