3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5Q_076 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1002
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V5Q|1|BA|U|606
4V5Q|1|BA|U|607
4V5Q|1|BA|A|608
4V5Q|1|BA|A|609
4V5Q|1|BA|G|610
*
4V5Q|1|BA|C|618
4V5Q|1|BA|G|619
4V5Q|1|BA|G|620
4V5Q|1|BA|A|621
4V5Q|1|BA|G|622

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BP
50S RIBOSOMAL PROTEIN L15

Coloring options:


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