IL_4V5Q_176

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V5Q|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_176 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1049

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V5Q|1|CA|G|148
4V5Q|1|CA|A|149
4V5Q|1|CA|C|150
4V5Q|1|CA|A|151
4V5Q|1|CA|A|152
4V5Q|1|CA|C|153
*
4V5Q|1|CA|G|168
4V5Q|1|CA|C|169
4V5Q|1|CA|U|170
4V5Q|1|CA|A|171
4V5Q|1|CA|A|172
4V5Q|1|CA|U|173
4V5Q|1|CA|C|174

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20