3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5Q_249 not in the Motif Atlas
Geometric match to IL_7RQB_021
Geometric discrepancy: 0.0956
The information below is about IL_7RQB_021
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

4V5Q|1|DA|U|703
4V5Q|1|DA|G|704
4V5Q|1|DA|A|705
4V5Q|1|DA|A|706
4V5Q|1|DA|G|707
*
4V5Q|1|DA|U|724
4V5Q|1|DA|G|725
4V5Q|1|DA|G|726
4V5Q|1|DA|A|727
4V5Q|1|DA|G|728

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain DD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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