IL_4V5Q_362

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGGAG*CGUGGAUCC

Length

15 nucleotides

Bulged bases

4V5Q|1|DA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_362 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3193

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5Q|1|DA|G|80
4V5Q|1|DA|G|81
4V5Q|1|DA|G|82
4V5Q|1|DA|G|83
4V5Q|1|DA|A|84
4V5Q|1|DA|G|85
*
4V5Q|1|DA|C|97
4V5Q|1|DA|G|98
4V5Q|1|DA|U|99
4V5Q|1|DA|G|100
4V5Q|1|DA|G|102
4V5Q|1|DA|A|103
4V5Q|1|DA|U|104
4V5Q|1|DA|C|105
4V5Q|1|DA|C|106

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D2

50S RIBOSOMAL PROTEIN L29

Chain DY

50S RIBOSOMAL PROTEIN L24