IL_4V5R_065

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V5R|1|BA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_065 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.1924

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_54465.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5R|1|BA|G|81
4V5R|1|BA|G|82
4V5R|1|BA|G|83
4V5R|1|BA|A|84
4V5R|1|BA|G|85
*
4V5R|1|BA|C|97
4V5R|1|BA|G|98
4V5R|1|BA|U|99
4V5R|1|BA|G|100
4V5R|1|BA|G|102
4V5R|1|BA|A|103
4V5R|1|BA|U|104
4V5R|1|BA|C|105

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L29

Chain BY

50S RIBOSOMAL PROTEIN L24