IL_4V5R_142

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_142 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.3716

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.1

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V5R|1|BA|U|2098
4V5R|1|BA|U|2099
4V5R|1|BA|G|2100
4V5R|1|BA|G|2101
*
4V5R|1|BA|U|2189
4V5R|1|BA|G|2190
4V5R|1|BA|G|2191

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11