IL_4V5R_344

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCG*CAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_344 not in the Motif Atlas

Homologous match to IL_7A0S_112

Geometric discrepancy: 0.5776

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V5R|1|DB|G|16
4V5R|1|DB|C|17
4V5R|1|DB|G|18
*
4V5R|1|DB|C|65
4V5R|1|DB|A|66
4V5R|1|DB|G|67
4V5R|1|DB|C|68

Current chains

Chain DB

5S RIBOSOMAL RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DS

50S RIBOSOMAL PROTEIN L18

Chain DZ

50S RIBOSOMAL PROTEIN L25